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Recovery of 4 novel Potato spindle tuber viroid sequence variants from Russian seed potatoes

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AA ProMED-mail post
ProMED-mail is a program of the International Society for Infectious Diseases

Date: April 23, 2007
From: The American Phytopathological Society (APS), Plant Disease [edited] <http://www.apsnet.org/pd/searchnotes/2007/PDIS-91-4-0469C.asp>

First described in the early 1930s, the limited distribution of potato "gothic" disease made it of little economic significance in European Russia until the early 1970s when meristem-tip culture was widely adopted throughout the former USSR to increase production of virus-free seed potatoes. Shortly thereafter, the yield and quality of Russian seed potatoes began a dramatic decline. Symptoms of potato "gothic" resemble those of _Potato spindle tuber viroid_ (PSTVd) (3), and initial suspicions that in vitro plantlets and seed potatoes might be viroid-infected were later proved correct when Kastalyeva et al (2) showed that approximately 50 to 70 percent of in vitro plantlets and tubers collected from different regions of Russia as well as the in vitro germplasm collection maintained by the All-Russian Potato Research Institute (ARPRI, VNIIF) were infected with PSTVd. Measures have since been taken to reduce the incidence of PSTVd infection, and numerous PSTVd isolates were collected from territories of the former USSR; however, none of these isolates have been characterized at the molecular level.

Four PSTVd isolates maintained in field-grown tubers at the VNIIF were subjected to sequence analysis. This revealed the presence of 4 previously unknown PSTVd variants. All 4 tubers were also infected with _Potato virus M_ and _Potato virus Y_ and one tuber also contained _Potato virus S_. Tests for _Potato leaf roll virus_ were negative. Each isolate appeared to contain only a single nucleotide variant differing from PSTVd-intermediate strain at 2-5 positions.
The 3 closely related variants originating from Leningradskaya Province (Northwest Russia) contained 2 to 3 nucleotide changes and induced intermediate symptoms in Rutgers tomato. The 4th variant originating from Samarskaya Province (Volga River Region) contained additional changes and induced mild symptoms. Minor differences among the Leningradskaya variants may represent sequence drift during extended (9-11 years) tuber passage. The presence of additional sequence changes in the variant from Samarskaya is consistent with independent origin and/or prolonged separation. Additional studies with a wider range of Russian isolates of PSTVd are currently underway to develop diagnostic methods suitable for future large-scale screening programs.

References:
1. Y. Hu et al. Virology 219:45, 1997.
2. T. B. Kastalyeva et al. Vestn. RASKHN 3:22, 1992.
3. Y. A. Leontyeva: Potato spindle tuber ("gothic") as one of the most important diseases in the Volga region. (In Russian) Ph.D.
thesis. Agricultural University of Leningrad, Pushkin, 1971.

[Byline: T. Kastalyeva, K. Mozhaeva, et al]

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[PSTVd affects solanaceous crops causing severe losses in potato (up to 65 percent) and tomato (up to 50 percent). Resistant cultivars are not available. In the EU it is listed as an A1 quarantine pathogen.
Spread occurs via infected tubers or plants, seed, pollen, mechanical means, or plant-to-plant contact. Only in the presence of _Potato leaf roll virus_ it can also be transmitted by an aphid vector (_Myzus persicae_).

Meristem tip culture is a form of tissue culture that has been used to obtain virus-free material for plant propagation. Intra-cellular plant pathogens -- such as viruses and viroids -- spread from cell to cell and newly formed cells in the meristem will be invaded. If the meristem is removed from the older infected cells before the pathogen has spread, virus/viroid-free cell lines can be obtained. However, it is necessary to verify the virus/viroid free status of the resulting lines. For PSTVd, more than 50 percent of resulting plantlets were found to be viroid-free when cold-treatment (6 months at 6-8 deg C
(43-46 deg F) preceded meristem tip culture (Lizarraga et al 1980; Phytopath. 70, 754).

'Novel' in this context means 'taxonomically new'. A novel strain of a known pathogen can vary in important disease aspects such as type of symptoms induced and host range. In many cases just a few nucleotide changes have been found to lead to major changes in the pathogen/host interaction. This stresses the importance of biosecurity even for pathogens that are already present in a certain area since there may be strains of increased virulence imported from elsewhere. On the other hand, mild strains or strains which induce no symptoms at all can be used in some instances for protecting host plants from infection with severe strains.

A map of the worldwide distribution of PSTVd is available at <http://www.eppo.org/QUARANTINE/virus/PSTVd/PSTVD0_map.htm>

Pictures:
<http://www.forestryimages.org/browse/subimages.cfm?SUB=11936>
Leaf symptoms on potato:
<http://www.omafra.gov.on.ca/english/crops/facts/98-02514.jpg>
Affected potato tubers:
<http://vegetablemdonline.ppath.cornell.edu/Images/Potatoes/PotatoViruses/PotatoVirusfs7.jpg>

A description of PSTVd can be found at
<http://www.ictvdb.rothamsted.ac.uk/ICTVdB/index.htm>
Information on PSTVd infection of crops is available at <http://www.defra.gov.uk/planth/pestnote/pstv.htm>
Plant Disease, latest issue: <http://www.apsnet.org/pd/current/>. - Mod.DHA]

[see also
in the archive:
2004
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Potato spindle tuber viroid, tomato - Germany 20040630.1738 Potato spindle tuber viroid, tomato - United Kingdom 20040117.0179
2003
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Potato spindle tuber viroid, tomato - United Kingdom 20030909.2268 Potato spindle tuber viroid, eradication - France 20030814.2021 Potato spindle tuber viroid - Canada: eradication 20030806.1928 Potato spindle tuber, tomato - Australia: eradication 20030804.1913 Potato spindle tuber, tomato - Australia (NSW) (02) 20030620.1516 Potato spindle tuber, tomato - Australia (NSW) 20030618.1506
2002
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Potato spindle tuber viroid, potato - France 20021011.5520
2001
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Potato spindle tuber viroid, tomatoes - Australia 20010622.1186 Potato spindle tuber viroid - New Zealand 20010314.0514 2000
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Potato spindle tuber viroid - Costa Rica 20000221.0236]

 

 

 

 

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