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National Science Foundation awards 19 new projects to better understand genetic processes in plants of economic importance
Washington, DC
October 6, 2005

The National Science Foundation (NSF) made 19 new awards totaling $58.7 million in the eighth year of its Plant Genome Research Program (PGRP). The 2- to 5- year awards, ranging from $622,000 to $7.7 million, fund research and tools to reveal information in the genomes of economically important crop plants such as wheat and soybeans as well as increase understanding of the genetic control of plant processes including disease resistance, flavor development, seed growth and wood formation.

"PGRP-funded research is helping to unearth secrets rooted in plant genomes," said Mary Clutter, head of NSF's biological sciences directorate. "In addition to enabling discoveries in basic plant biology, these latest projects will expose a host of new students to cutting-edge plant genome research. Well-trained students are critical to the future of plant biology," Clutter continued.

The new awards, made to 36 U.S. institutions in 24 states, include three international collaborative projects. First-time PGRP award recipients include California Polytechnic State University-San Luis Obispo, Claflin University, Michigan Technological University, University of Puget Sound, University of South Carolina and University of Wyoming.

The genomes of economically important plants are often large and complex, but through in-depth studies scientists will uncover information that can be translated into new and improved products and practices. Plant genome research holds enormous promise for improving plants of all sizes, from small crop plants to towering trees.

Examples of awards targeting major crop plants include:

  • A project led by the University of Washington in Seattle investigates the poorly understood, yet widely accepted phenomenon of "hybrid vigor," whereby offspring turn out bigger and hardier than their parents.
  • Researchers at University of Illinois Urbana-Champaign explore nitrogen responses in maize to elucidate the genetic basis for dramatically increased yields following fertilization. This project includes an NSF-supported Developing Country Collaboration with the International Institute for Tropical Agriculture in Nigeria.
  • A University of California, Los Angeles-led project focuses on the soybean to identify all of the genes and regulatory networks required to make a seed. Knowledge gained from studying soybean seed, an important source of human and animal nutrition and a raw material for industrial applications, will likely be applicable to seeds from all plants.

Another subset of awards centers on understanding the genetics of trees. Trees are naturally important to produce oxygen, provide shade and fight soil erosion and also supply more than 5,000 items in our daily lives--from fuels and paper to fruit and medicines. Studying trees has challenged researchers, in part because of the plants' large sizes and long life cycles. Three projects are developing and using genomic tools to better understand tree metabolism and development.

  • Researchers at the University of California, Davis study genetic variation associated with wood quality and disease resistance in loblolly pine, potentially developing new resources for tree breeding.
  • Michigan Technological University investigates the metabolic pathways leading to synthesis of salicylates, aspirin-related plant compounds that confer disease resistance in poplar trees.
  • Mississippi State University researchers examine the regulation of genes associated with the flowering process in poplar trees.

The PGRP, established in 1998 as part of the coordinated National Plant Genome Initiative by the Interagency Working Group on Plant Genomes of the National Science and Technology Council, has a long-term goal of advancing the understanding of the structure and function of genomes of plants of economic importance.

Complete list of the 2005 PGRP awards and links to project abstracts:
 

National Science Foundation
Plant Genome Research Program
Collaborative Research on Functional Genomics

Principal Investigator

Institution

Title

Total Award ($)

Total Duration (yrs)

Barbazuk, William         

0501758

Danforth Plant Science Center Ab Initio Gene Finding in Maize

$622,027

2

Bennetzen, Jefferey

0501814

University of Georgia Research Foundation Inc.

 

Characterizing the Wheat Genome by Random Sample Sequencing

$1,471,641

3

Brutnell, Thomas

0501713

Boyce Thompson Institute

A Two Component Activator/Discussion Platform for Reverse and Forward Genetic Analysis in Maize

$3,779,502

5

Comai, Luca

0501712

University of Washington

Functional Genomics of Plant Polyploids

$7,766,348

5

Galbraith, Dale

0501914

University of Arizona

Self-assembling Autofluorescent Protein Microarrays, a Universal Resource for The Plant Research Community

$1,674,010

2

Goldberg, Robert

0501720

University of Cal Los Angeles

Genes Required to Make a Soybean Seed

$7,571,004

5

Jackson, David

0501862

Cold Spring Harbor

Characterizing Sub-cellular Compartments in Maize Using Fluorescent Protein Tagged Lines

$4,950,172

         5        

Jackson, Scott

0501877

Purdue University

SoyMap: an Integrated Soybean Genome Map

$4,496,047

4

Jorgensen, Richard

0501824

University of Arizona

Functional Genomics by Sense-RNAi: A Forward Genetic Approach for Cell-Type-Targeted Mutagenesis and for Polyploids

$1,641,880

3

Klee, Harry

0501778

University of Florida

Functional Genomic Analysis of Fruit Flavor and Nutrition Pathways

$2,019,969

4

Harper Jeffrey

0530346

The Scripps Research Institute

Prediction and Validation of Phospho-Regulatory Sites in Crop Plant Proteomes

$691,501

2

Langley, Charles

0501763

University of Cal Davis

Association Genetics of Natural Genetic Variation and Complex Traits in Pine

$5,902,886

4

Luthe, Dawn

0501890

Mississippi State University

Functional Genomics of Woody Perennial Flowering

$1,753,316

3

Moose, Stephen

0501700

University of III Urbana-Champaign

Gene Discovery for Maize Responses to Nitrogen

$2,606,096

5

Schwartz, David

0501818

University of Wisconsin Madison

 

A Genome-Wide Optical Map for Maize

$983,908

2

Tsai, Chung-Jui

0421756

MI Tech University

A Functional Genomics Approach to Investigate Regulation of Phenolic Glycoside Metabolism in Populus

$2,114,095

4

Vance, Vicki

0501760

USC Research Foundation

Small RNAs in Rice and Maize

$1,203,620

3

Voytas, Daniel

0501678

Iowa State University

A Homologous Recombination System for Plants Based on Zinc Finger Nucleases

$1,931,010

4

Wise, Roger

0500461

Iowa State University

 

Functional Genomics of Plant Disease Defense Pathways

$2,093,192

4

Yu, Yeisoo

0501857

University of Arizona

Maize Full-length cDNA Project

$4,658,148

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