Los Baños, The Philippines
April 5, 2002
Scientists at the
Philippine-based
International Rice Research Institute (IRRI) are signaling a
new era in rice research with the publishing on April 5 of the
latest draft sequences of the rice genome, or genetic makeup, of
the two main types of rice grown in the world today.
"The milestone publication in this week's Science (magazine) of
not one, but two, draft genome sequences of rice brings the
cereal crop of the world's poor to center stage," wrote Ronald
P. Cantrell, director general of the International Rice Research
Institute (IRRI), and Timonthy G. Reeves, director general of
the International Maize and Wheat Improvement Center (CIMMYT),
in a commentary appearing in Science, where the genome
information was published.
"We believe that the genome sequencing of the world's two most
important rice subspecies will be the first sequencing projects
to yield tangible results for humankind from the standpoints of
food security and combating malnutrition," Dr Cantrell said. The
draft sequence of the indica rice subspecies was done by the
Beijing Genomics Institute (BGI) in China, and the japonica
subspecies was further sequenced by a team from the Swiss
company Syngenta. Both groups published their results in Science
this week amid predictions of the enormous potential impact on
rice production.
What is so special about rice production? Put simply, no other
economic activity feeds so many people, supports so many
families, is so crucial to the development of so many nations,
or has more impact on our environment. Rice production feeds
almost half the planet each day, provides most of the
main income for millions of poor rural households, helps ensure
social stability in some of the world's biggest nations, and
covers 11 percent of the earth's arable area.
However, Dr. Cantrell stressed that just as important as the
actual scientific advances achieved was the public sharing of
information by both groups. "IRRI advocates broad collaborations
in rice research that embrace innovations by both the public and
private sectors, with emphasis on the need to provide the best
science to serve the poor," he said. "The public availability of
the rice sequences published in this issue [of Science] will
boost this commitment.
"The continuing challenge for all scientists is to broaden the
developing world's access to information and technology," Dr.
Cantrell said. "We must provide not only finished products but
also the technologies that will enable a new generation of
researchers in developing countries to solve their food
production problems."
In light of this, Syngenta's efforts to negotiate a regime for
making its rice data available have been welcomed by researchers
at publicly funded institutions - particularly at IRRI, which
this week marked its 42nd year of helping to ensure global food
security and alleviate poverty.
"It is extremely important that Syngenta continue its efforts to
provide nonprofit organizations, academic institutions and
governments free access to data on the rice genome," said Per
Pinstrup-Anderson, director general of the International Food
Policy Research Institute (IFPRI) and winner of the
2001 World Food Prize. "We encourage Syngenta to make all
relevant data freely accessible in the public domain." IFPRI is
a sister Future Harvest center of IRRI, both of them publicly
funded through the Consultative Group on International
Agriculture (CGIAR)
IRRI, like many of the other publicly funded Future Harvest
centers, relies on the broad sharing of genetic information and
seed stocks to breed crop varieties that offer farmers higher
yields, greater resistance to pests and diseases, improved
tolerance for drought, submergence and problem soils, as
well as good eating quality, and ready marketability.
Dr. Cantrell also stressed that despite the great significance
of the sequencing work by the BGI and Syngenta, a complete
understanding of the rice genome has still not been reached.
"These drafts will be combined with a complete rice genome
sequence being compiled by the public International Rice Genome
Sequencing Project (IRGSP) coordinated by the Japan Rice Genome
Program." The finely detailed IRGSP sequence, which will have an
error rate of less than 0.01 percent, is expected to be
published by the end of this year.
"The highly accurate IRGSP sequence will serve as the gold
standard for all future investigations of genetic variation in
crops," Dr Cantrell said, adding that by decoding the rice
genome, scientists had shed light on the larger, but parallel,
genomes of other agriculturally significant cereals such as
wheat and maize.
"Knowing the sequence of specific genes will allow us to tap
into the natural genetic variation of crop species," wrote Hei
Leung, a plant pathologist at IRRI, and Pamela Ronald, from the
Department of
Plant Pathology at the University of California, Davis, in
another commentary in Science. "In rice, there are over 100,000
accessions of traditional rice varieties and wild species
(together referred to as germplasm) collected from a broad range
of geo-climates and held in trust" in the International Rice
Genebank at IRRI.
"These rice seeds serve as a pool of 'natural variants' with the
advantage that some of these variants (alleles) have already
been 'tested' through years of natural or artificial selection
under different environmental conditions," Drs. Leung and Ronald
continued. "To date, this wealth of information has remained
largely untapped owing to the difficulty of identifying
agronomically important genes.... The convergence of the
different versions of the genome sequence by the end of 2002
will yield great insight into the relation between sequence
diversity and functional diversity in a wide variety of
germplasm, the foundation on which agricultural productivity
depends."
"Although achieving food security will require a multitude of
social and economic solutions, the new knowledge derived from
genomics research will make an important contribution," they
added. "The challenge ahead for the plant research community is
to design efficient ways to tap into the wealth
of rice genome sequence information to address production
constraints in an environmentally sustainable manner."
IRRI is the world's leading international rice research and
training center. Based in the Philippines and with offices in 11
other countries, it is an autonomous, nonprofit institution
focused on improving the
well-being of present and future generations of rice farmers and
consumers, particularly those with low incomes, while preserving
natural resources. IRRI is one of 16 Future Harvest centers
funded the Consultative Group on International Agricultural
Research (CGIAR), an association of public and private donor
agencies.
For more information, visit the websites of
CGIAR or
Future Harvest.
Future Harvest is a nonprofit
organization that builds awareness and supports food and
environmental research for a world with less poverty, a
healthier human family, well-nourished children, and a better
environment. Future Harvest supports research, promotes
partnerships, and sponsors projects that bring the results of
agricultural research to rural communities, farmers, and
families in Africa, Latin America, and Asia.
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